Neuropixels Probe
A CMOS chip thinner than a human hair that slides silently into living brain tissue and simultaneously listens to hundreds of individual neurons — reading the electrical whispers of thought at single-cell, single-spike resolution.
The Neuropixels probe records the electrical activity of individual neurons — action potentials ('spikes') lasting less than 1 ms — from hundreds of cells simultaneously, across multiple layers or regions of the brain. The probe is inserted into living brain tissue; its 960 titanium-nitride (TiN) electrode sites detect the extracellular voltage fluctuations caused by nearby neurons firing. Any 384 of those sites can be selected and digitised simultaneously in the action-potential (AP) band at 30 kHz with approximately 5–7 μV RMS input-referred noise. The same channels also record the local field potential (LFP) at 2.5 kHz. On-chip analogue amplification, analogue-to-digital conversion, and digital multiplexing mean that all 384 channels of data exit the brain on a single thin cable, rather than 384 individual wires. This allows neuroscientists to follow dozens to hundreds of identified single neurons across multiple brain structures in freely moving mice, rats, and non-human primates during complex behaviours — a scale impossible with any prior electrode technology.
The probe shank is a silicon needle 10 mm long and 70 × 20 μm in cross-section — slender enough to displace minimal brain tissue and cause only transient mechanical injury. Along the shank, 960 low-impedance TiN electrode sites (each ~12 × 12 μm, impedance ~150 kΩ at 1 kHz) are tiled at 20 μm vertical pitch in a staggered two-column pattern. The probe is fabricated in a 130 nm CMOS process, with all analogue front-end circuitry (amplifiers, filters, ADCs, digital multiplexers) integrated on the probe base — a square die roughly 9 mm × 9 mm glued to the top of the shank. Each recording channel passes the extracellular signal through a high-pass filter (corner at 300 Hz for AP, 0.5 Hz for LFP), an amplifier with gain ~500, and a 10-bit ADC running at 30 kHz (AP) or 2.5 kHz (LFP). A digital serialiser combines all channel data into a 163.8 Mb/s data stream sent over a thin coaxial cable to a PXIe data acquisition module. Total power dissipation is approximately 15 mW — critically low enough that shank self-heating remains below 1°C, preserving the thermal environment of the recorded neurons. User-programmable switches under each electrode site allow any 384 of the 960 sites to be selected without moving the probe, enabling systematic mapping of the neuron population along the full shank depth.
In plain terms
Imagine you want to listen to individual musicians in an orchestra playing in a dark room. An old microphone could only hear the whole audience at once. The Neuropixels probe is like threading a strand of hair through the room, with 960 tiny microphones along its length — each one so sensitive it can pick out a single violin, even while the whole orchestra is playing. That's how it hears individual neurons firing inside a living brain.
Also called: Neuropixels 1.0, Neuropixels 2.0, high-density silicon probe, CMOS neural probe, NPx probe.
Why it matters
- Simultaneous recording from 384 channels on a single 70 × 20 μm shank is more than an order of magnitude denser than any electrode technology available before 2017, enabling systematic single-unit surveys of entire cortical columns and subcortical structures in a single session.
- The low 5–7 μV RMS input-referred noise — achieved by integrating amplifiers within ~20 μm of each electrode on the same CMOS die — allows reliable isolation of single-unit spikes from small neurons that would be invisible to conventional silicon probes.
- Neuropixels 2.0 (Steinmetz et al., Science 2021) extended recording stability to months in chronically implanted animals, combined with algorithms that correct for brain drift — opening the first reliable window onto how single identified neurons evolve over weeks of learning.
- The probe was developed by a public consortium (IMEC, HHMI Janelia Research Campus, UCL, Allen Institute for Brain Science) and is sold at cost to academic researchers, having been distributed to more than 400 laboratories worldwide within five years of launch — reshaping the landscape of systems neuroscience.
- Combined with Neuropixels 2.0's four-shank version, researchers can now simultaneously record from 5,120 electrode sites across four parallel tracks 250 μm apart, enabling large-scale volumetric sampling of neural population dynamics across multiple brain areas in a single surgical session.
Where it lives
- Allen Brain Observatory (Allen Institute) — Neuropixels-based large-scale survey of visual cortex, hippocampus, and subcortical areas across hundreds of mice; data released publicly
- HHMI Janelia Research Campus — primary development site for NPx 1.0; used for whole-brain activity mapping in larval zebrafish and mouse
- University College London (UCL) — consortium partner and primary centre for freely-moving-rat and freely-moving-mouse Neuropixels recording methods development
- Open Ephys acquisition system — open-source hardware and software used by the majority of Neuropixels labs for real-time data acquisition and visualisation
- Non-human primate (NHP) labs globally — Neuropixels 1.0 NHP Long (45 mm shank, 4,416 sites) enables deep-brain high-density recording in macaques for motor-cortex and prefrontal studies
Key numbers
- Simultaneous recording channels: 384 (Selectable from 960 sites (NPx 1.0) or 1,280 per shank (NPx 2.0 single shank) or 5,120 (NPx 2.0 four-shank version))
- Shank dimensions (NPx 1.0): 10 mm long × 70 μm wide × 20 μm thick (Single shank; tip sharpened to facilitate insertion; cross-section smaller than most individual neurons)
- Electrode site count (NPx 1.0): 960 TiN sites (20 μm vertical pitch, staggered two-column layout; TiN material; impedance ~150 kΩ at 1 kHz)
- AP band input-referred noise: ~5.7 ± 0.8 μV RMS (Jun et al., Nature 2017; enables reliable single-unit isolation from small neurons)
- AP sampling rate: 30 kHz (High-pass filtered at 300 Hz; LFP band sampled at 2.5 kHz (low-pass at 500 Hz))
- CMOS process node: 130 nm (All amplification, filtering, ADC, and multiplexing integrated on the probe base die; enables on-shank signal conditioning)
- Total power dissipation: ~15 mW (recording mode) (Shank heating <1°C in brain tissue; power budget constrained by thermal physiology, not silicon capability)
- Data rate: 163.8 Mb/s (Per probe; LVDS serial link to PXIe acquisition module; four probes simultaneously generate ~650 Mb/s raw data)
Surprising facts
- A single Neuropixels 1.0 shank — 70 μm wide and 20 μm thick, thinner than a human hair — carries 960 individually addressable electrode sites and the full CMOS analogue-digital recording chain, all on a silicon structure you could lose between your fingers.
- In the largest Neuropixels 2.0 sessions, researchers have simultaneously recorded from more than 6,000 individually identified neurons across ten brain areas in a single mouse brain — a number that exceeded the entire cumulative single-unit dataset of rodent neuroscience for the preceding three decades of microelectrode recording.
- The 30 kHz AP sampling rate, 10-bit ADC, and 384-channel readout produce approximately 20 MB/s of raw data per probe. A recording session using four probes simultaneously generates more data per hour than most neuroscience laboratories once collected in a year.
- Shank heating is less than 1°C at 15 mW total power dissipation. This thermal budget is tighter than any portable consumer electronics: even slight overheating would alter local neural excitability and invalidate every recorded spike, so the CMOS power budget was constrained by neuroscience physiology, not silicon limits.
Open questions
- Brain tissue moves around the probe while neurons are being recorded: The brain is not a static medium: it pulsates with each heartbeat and breath, shifting by 10–50 μm relative to a fixed probe over a recording session. Over days to weeks in a chronic implant, the brain drifts even further as tissue encapsulates the probe. A neuron that appears at electrode site 120 on Monday may have migrated to site 118 by Friday — or may have been replaced by a different cell. Neuropixels 2.0 introduced a linear symmetric electrode layout and drift-tracking algorithms that follow individual spike waveforms as they slide along the shank, enabling the same neuron to be tracked for more than two months. But whether any particular recorded unit at two time points is the same biological neuron remains, in borderline cases, a probabilistic rather than certain assignment.
- Spike-sorting at scale is an unsolved problem even with 384 channels: Neuropixels generates far more data than a human can review manually. Automated spike-sorting algorithms (Kilosort, MountainSort, etc.) cluster extracellular voltage traces into putative single units, but the ground-truth labelling problem — verifying which spikes belong to which neuron — has no gold standard in vivo. Different algorithms applied to the same recording can produce unit counts differing by 20–50%, and the fraction of spikes correctly attributed to a single neuron varies by cell type, brain region, and recording quality in ways that are still being quantified. Every published Neuropixels dataset implicitly relies on an algorithm whose error rate in that specific brain region is unknown.
A short history
Before Neuropixels, the practical limit for simultaneous single-unit recording in an awake animal was roughly 100–150 channels per session, achieved by manually assembled tetrode bundles or the Utah array. The idea that CMOS technology used in consumer imaging sensors could be adapted to neural recording was explored in academic prototypes through the 2000s (e.g. Michigan probe designs at the University of Michigan), but integration density and noise performance remained inadequate. In 2011, imec (the Belgian microelectronics research centre) initiated a collaboration with HHMI Janelia Research Campus, UCL, and the Allen Institute to design a ground-up neural recording ASIC using imec's 130 nm CMOS process. The result — the Neuropixels 1.0 probe — was described by Jun, Steinmetz, Bhatt, Bhatt, Bhatt and 58 co-authors in Nature in November 2017. Within two years, more than 400 laboratories worldwide had adopted the probe. Neuropixels 2.0, reported by Steinmetz, Aydin, Bhatt and colleagues in Science in April 2021, extended the design to 5,120 electrode sites across four shanks, adding drift-correction algorithms that enabled stable single-unit tracking across months of chronic implantation. Neuropixels probes have since enabled the largest single-session neural population recordings in rodent history, fundamentally changing the questions neuroscientists can ask about population coding, learning, and brain-wide coordination.
Sources
- Jun J.J. et al. — 'Fully integrated silicon probes for high-density recording of neural activity', Nature 551, 232–236 (2017). DOI: 10.1038/nature24636 (https://www.nature.com/articles/nature24636)
- Steinmetz N.A. et al. — 'Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings', Science 372, eabf4588 (2021). DOI: 10.1126/science.abf4588 (https://www.science.org/doi/10.1126/science.abf4588)
- Neuropixels 1.0 datasheet — imec / neuropixels.org (probe specifications, electrode layout, electrical performance) (https://www.neuropixels.org/probe1-0)
- Neuropixels 2.0 datasheet — imec / neuropixels.org (https://www.neuropixels.org/probe2-0)
- Allen Brain Observatory — Neuropixels probe description and data documentation (https://allenswdb.github.io/background/neuropixels-description.html)
- UCL Faculty of Brain Sciences — Neuropixels 1.0 overview and development history (https://www.ucl.ac.uk/brain-sciences/neuropixels/neuropixels-10)
- Siegle J.H. et al. (Allen Institute) — 'Survey of spiking in the mouse visual system reveals functional hierarchy', Nature 592, 86–92 (2021). DOI: 10.1038/s41586-020-03171-x [large-scale NPx application] (https://doi.org/10.1038/s41586-020-03171-x)